Protein Data Bank (PDB) format is a standard for files containing atomic coordinates. It is used for structures in the Protein Data Bank and is read and written by many programs.

Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.

The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank, now succeeded by the mmCIF format.

1.1. Introduction to Protein Data Bank Format andard for files containing atomic coordinates. Structures deposited in the Protein Data Bank at the Research Collaboratory for Structural Bioinformatics …

As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources.

Mar 24, 2022 · A PDB file is a database file used by various applications, including Pegasus, Quicken, Microsoft Visual Studio, and Palm Pilot software. It stores data in a structured format and is typically …

We explore an example of a PDB file, how to download it, its format and content, and explain the B-factor in protein crystallography.

Jun 10, 2025 · Explore the ultimate guide to PDB format, covering its features, applications, and best practices for working with PDB files in structural genomics and beyond.

PDB files, the standardized format for storing three-dimensional (3D) structures of proteins and other macromolecules, play a pivotal role in elucidating their atomic coordinates and providing insights into …

This format overcomes limitations of the legacy PDB file format and supports data representing large structures, complex chemistry, and new and hybrid experimental methods.